Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs75482840 chr18:13824215 G/A 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs75488940 chr16:79271665 T/G 5.77E-12 501 31.5 31 19.35 KM Plot
THCA rs7553037 chr1:41507401 G/T 1.22E-7 502 27.33 30.48 31.92 KM Plot
THCA rs75686454 chr5:178259835 A/G 2.97E-5 500 31.47 32.9 24.9 KM Plot
THCA rs75691516 chr10:104652045 C/T 2.91E-9 501 31.03 35.33 29.58 KM Plot
THCA rs7569868 chr2:87019683 C/T 3.05E-7 502 32.35 28.83 32.1 KM Plot
THCA rs7572257 chr2:234337940 C/T 6.09E-7 503 31.68 31.23 7.77 KM Plot
THCA rs75736447 chr16:79269842 C/G 2.35E-9 485 31.5 31.33 24.17 KM Plot
THCA rs75837874 chr14:103975472 G/T 3.3E-5 492 31.57 32.1 15.97 KM Plot
THCA rs76013972 chr10:29329194 T/A 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs76018044 chr7:16461509 T/C 4.14E-5 490 31.28 32.6 33.48 KM Plot
THCA rs76039896 chr8:8385219 A/C 0.000104 496 31.7 31.37 23.93 KM Plot
THCA rs76072955 chr7:16465440 A/T 3.66E-5 492 31.38 31.98 33.48 KM Plot
THCA rs7608723 chr2:46367592 C/T 0.000152 502 11.73 34.1 31.47 KM Plot
THCA rs7612419 chr3:122425291 C/T 6.46E-6 497 31.98 31.15 20.87 KM Plot